Screenshot Summary:

64565_screenshot_2.1
	2.1.1 (BWA Index & HISAT2 Index)
	2.1.2 (Prepare YML config file)
	2.1.3 (RUn CIRIquant)
	
64565_screenshot_2.2
	2.2.1 (Prepare .lst file)
	2.2.3 (Run prep_CIRIquant)
	2.2.4 (Prepare a second text file)
	2.2.5 (Run prepDE.py)
	2.2.6 (Execute CIRI_DE_replicate)
	
64565_screenshot_2.3
	2.3.1 (Open the tsv file to filter and determine the DE circRNAs)
	
64565_screenshot_4.1
	4.1.1 (Unzip and extract contents of Circr.zip)
	4.1.2 (Install prerequisite software applications)
	4.1.5 (Index reference genome)
	4.1.6 (Prepare a circRNA BED input file)
	
64565_screenshot_4.2
	4.2.1 (Execute Circr.py)
	4.2.3 (Circr outputs a csv file)
	
64565_screenshot_5
	5.1.3 Prepare a tab-delimited file containing the circRNAs and miRNAs) 0:00-0:18
	5.2.1 Open the Cytoscape software 0:18-0:21
	5.2.2 Upload the file prepared in 5.1.3 0:21-0:49
	5.2.5 Press the Style button on the left side of Cytoscape 0:49-0:52
	5.2.6 Change the color representations for circRNA and miRNA 0:52-1:20
	5.2.7 Change shape representations for circRNA and miRNA 1:20-1:46
	
64565_screenshot_6
	6.1.1 Ensure ClusterProfiler and org.Hs.eg.db is installed and enabled 0:00-0:11
	6.1.2 Import the tsv file from CIRIquant 0:11-0:56
	6.1.3 Convert parental gene names to Entrez ID 0:57-1:12
	6.1.4 Run GO enrichment 1:12-1:19
	6.1.5 Run KEGG enrichment 1:19-1:27