data_file = /hpc/group/haaselab/rcm49/idv_files/timeseries/orlando2008_WildType_r1_trunc.tsv, /hpc/group/haaselab/rcm49/idv_files/timeseries/orlando2008_WildType_r2_trunc.tsv
annotation_file = /hpc/group/haaselab/rcm49/idv_files/annot_files/Scerevisiae_annot_symbols_yeasttract+.tsv
output_dir = /hpc/group/haaselab/rcm49/idv_files/two_wts_results
num_proc = 32
verbose = True
IDVconnection = True

[dlxjtk_arguments]
periods = [90, 95, 100],[95, 100, 105]
dlxjtk_cutoff = 10
num_reg = 1000000
num_per = 0
pval_combine_method = max

[lempy_arguments]
loss = euc_loss
  [[minimizer_params]]
  niter = 10
  T = 1
  stepsize = .5
  interval = 10
  disp = False
  seed = 0

[netgen_arguments]
edge_score_column = pld
num_edges_for_list = 20
#num_edges_for_seed = 4
seed_threshold = 0.98


[netper_arguments]
range_operations = 2, 10
numneighbors = 2000
maxparams = 2000
time_to_wait = 600

[[probabilities]]
	addNode = 0.2
	addEdge = 0.8
	removeNode = 0.0
	removeEdge = 0.0

[[filters]]
    [[[is_strongly_connected]]]

[netquery_arguments]
stablefc = True
count = True
epsilons = 0.05,