data_file = /Users/robertmoseley/Desktop/Pipeline/inherent_dynamics_visualizer/data/files/timeseries/orlando2008_WildType_r1_trunc.tsv, /Users/robertmoseley/Desktop/Pipeline/inherent_dynamics_visualizer/data/files/timeseries/orlando2008_WildType_r2_trunc.tsv
annotation_file = /Users/robertmoseley/Desktop/Pipeline/inherent_dynamics_visualizer/data/files/annotation_files/IDV_annotation_file.tsv
output_dir = /Users/robertmoseley/Desktop/Pipeline/inherent_dynamics_visualizer/data/two_wts
num_proc = 4
verbose = True
IDVconnection = True

[lempy_arguments]
gene_list_file = /Users/robertmoseley/Desktop/Pipeline/inherent_dynamics_visualizer/data/files/gene_lists/IDV_gene_list.txt
loss = euc_loss
  [[minimizer_params]]
  niter = 10
  T = 1
  stepsize = .5
  interval = 10
  disp = False
  seed = 0

[netgen_arguments]
edge_score_column = pld
num_edges_for_list = 20
#num_edges_for_seed = 4
seed_threshold = 0.98