loss = euc_loss
gene_list_file = /Users/robertmoseley/Desktop/Pipeline/inherent_dynamics_visualizer/data/two_wts/node_finding_20210705183301/gene_list.tsv
data_files = /Users/robertmoseley/Desktop/Pipeline/inherent_dynamics_visualizer/data/files/timeseries/orlando2008_WildType_r1_trunc.tsv, /Users/robertmoseley/Desktop/Pipeline/inherent_dynamics_visualizer/data/files/timeseries/orlando2008_WildType_r2_trunc.tsv
verbose = True
num_proc = 32
annotation_file = /Users/robertmoseley/Desktop/Pipeline/inherent_dynamics_visualizer/data/files/annotation_files/Scerevisiae_annot_symbols_yeasttract+.tsv
param_bounds = tf_param_bounds
prior = uniform_prior
normalize = True
inv_temp = 1
seed = 1625526942
output_dir = /Users/robertmoseley/Desktop/Pipeline/inherent_dynamics_visualizer/data/two_wts/edge_finding_20210705183301
config_file = /Users/robertmoseley/Desktop/Pipeline/inherent_dynamics_visualizer/data/two_wts/edge_finding_20210705183301/lempy_20210705183301_config.txt
[minimizer_params]
    niter = 10
    T = 1
    stepsize = 0.5
    interval = 10
    disp = False
    seed = 0
    accept_test = <function bounded_accept_test at 0x7f941b274170>
    take_step = <utilities.bounded_take_step object at 0x7f941d7ff090>
[targets]
    HCM1 = ""
    SWI5 = ""
    YHP1 = ""
    SWI4 = ""
    RME1 = ""
    ASH1 = ""
    YOX1 = ""
    NDD1 = ""
    PLM2 = ""
    NRM1 = ""
[regulators]
    HCM1 = tf_act, tf_rep
    SWI5 = tf_act, tf_rep
    YHP1 = tf_act, tf_rep
    SWI4 = tf_act, tf_rep
    RME1 = tf_act, tf_rep
    ASH1 = tf_act, tf_rep
    YOX1 = tf_act, tf_rep
    NDD1 = tf_act, tf_rep
    PLM2 = tf_act, tf_rep
    NRM1 = tf_act, tf_rep
